QuPath is an open, powerful, flexible, extensible software platform for bioimage analysis.
QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images – but it can be applied to lots of other kinds of image as well.Features include:
Powerful annotation & visualization tools using a modern JavaFX interface
Built-in algorithms for common tasks, including cell and tissue detection
Interactive machine learning, both for object and pixel classification
Compatibility with other popular open tools, including ImageJ, OpenCV, Java Topology Suite and OMERO
Support for many image formats through Bio-Formats and OpenSlide, including whole slide images and multiplexed data
Groovy scripting for customization and deeper data interrogation